GeneModels:	refseq_zebrafish_genes_refflat
Alleles:	putativesnps.txt

Results are printed for each intersecting gene and include:
1) The UCSC gene model (Name(s),Chrom,GeneStart,GeneStop,Strand,TSS)
	2) The intersecting Alleles (Start,End,Allele,Notes)
		3) Their relative location and potential effects.

ascc2	NM_200442	chr5	19673095	19696076	-	19696076	
	19674584	19674585	C	Coverage:A:C:G:T = 7:0:7:0:0
		Coding exon 18
			Non-synonymous N > D
aacs	NM_201009	chr5	20611069	20681231	-	20681231	
	20681077	20681078	A	Coverage:A:C:G:T = 6:6:0:0:0
		Coding exon 1
			Non-synonymous Q > H
zgc:110185	NM_001017834	chr5	20696701	20708563	-	20708563	
	20696819	20696820	T	Coverage:A:C:G:T = 5:0:0:0:5
		Coding exon 10
			Non-synonymous S > N
pgam5	NM_001007323	chr5	20709066	20719984	+	20709066	
	20711151	20711152	G	Coverage:A:C:G:T = 44:0:4:40:0
		Coding exon 2
			Non-synonymous A > G
golga3	NM_001128545	chr5	20749243	20790039	-	20790039	
	20769244	20769245	T	Coverage:A:C:G:T = 4:0:0:0:4
		Coding exon 11
			Non-synonymous A > T
mmab	NM_001082809	chr5	21272908	21277376	-	21277376	
	21275665	21275666	G	Coverage:A:C:G:T = 3:0:0:3:0
		Coding exon 6
			Non-synonymous E > D
	21275892	21275893	T	Coverage:A:C:G:T = 3:0:0:0:3
		Coding exon 5 splice site
			Non-synonymous V > I
	21276755	21276756	A	Coverage:A:C:G:T = 4:4:0:0:0
		Coding exon 3 splice site
			Synonymous
si:dkey-175c11.1	NM_001126454	chr5	21495338	21536223	+	21495338	
	21535748	21535749	C	Coverage:A:C:G:T = 2:0:2:0:0
		Coding exon 2
			Non-synonymous E > D
tchp	NM_001040343	chr5	21651158	21662638	+	21651158	
	21655311	21655312	T	Coverage:A:C:G:T = 4:0:0:0:4
		Coding exon 4
			Non-synonymous E > D
	21655566	21655567	G	Coverage:A:C:G:T = 3:0:0:3:0
		Coding exon 5
			Non-synonymous Q > R
	21655636	21655637	T	Coverage:A:C:G:T = 15:0:0:0:15
		Coding exon 5
			Non-synonymous E > D
dao.2	NM_214732	chr5	21954036	21968993	-	21968993	
	21966875	21966876	A	Coverage:A:C:G:T = 42:41:0:0:1
		5' UTR
		Non-coding exon 2 splice site
dao.1	NM_001033740	chr5	21971207	21978699	-	21978699	
	21972995	21972996	G	Coverage:A:C:G:T = 17:0:0:17:0
		Coding exon 8
			Non-synonymous I > L
	21973188	21973189	C	Coverage:A:C:G:T = 4:0:4:0:0
		Coding exon 7
			Non-synonymous D > E
coro1ca	NM_201295	chr5	22102871	22200149	+	22102871	
	22184778	22184779	G	Coverage:A:C:G:T = 16:0:0:16:0
		Coding exon 5
			Non-synonymous I > V
si:ch211-191d15.2	NM_001003632	chr5	22227212	22229378	-	22229378	
	22229348	22229349	A	Coverage:A:C:G:T = 61:55:0:0:6
		Coding exon 1
			Non-synonymous R > W
limk2	NM_001002651	chr5	22606736	22646702	+	22606736	
	22645177	22645178	G	Coverage:A:C:G:T = 7:0:0:7:0
		Coding exon 16
			Non-synonymous T > A
	22645180	22645181	C	Coverage:A:C:G:T = 5:0:5:0:0
		Coding exon 16
			Non-synonymous F > L
cds2	NM_201186	chr5	22927596	22955527	+	22927596	
	22936834	22936835	T	Coverage:A:C:G:T = 2:0:0:0:2
		Coding exon 2 splice site
			Non-synonymous R > *
pdcd8	NM_200102	chr5	24333941	24357001	-	24357001	
	24345504	24345505	A	Coverage:A:C:G:T = 3:3:0:0:0
		Coding exon 4
			Non-synonymous S > C
zgc:113208	NM_001017892	chr5	24389174	24403207	-	24403207	
	24402826	24402827	C	Coverage:A:C:G:T = 28:0:26:0:2
		Coding exon 1
			Non-synonymous H > R
	24402868	24402869	A	Coverage:A:C:G:T = 16:16:0:0:0
		Coding exon 1
			Non-synonymous K > M
zgc:110800	NM_001014351	chr5	24635186	24651964	-	24651964	
	24640143	24640144	A	Coverage:A:C:G:T = 10:10:0:0:0
		Coding exon 8
			Non-synonymous S > L
si:dkeyp-20g2.6	NM_001100028	chr5	25156989	25186682	-	25186682	
	25171515	25171516	C	Coverage:A:C:G:T = 2:0:2:0:0
		Coding exon 19
			Non-synonymous N > K
mtmr2	NM_131371	chr5	25276559	25288849	-	25288849	
	25287908	25287909	G	Coverage:A:C:G:T = 19:0:1:18:0
		Coding exon 2
			Non-synonymous V > L
